Summary of ssbd-repos-000341

SSBD:repository
SSBD:repository URL
DOI
Title
Dataset for "Live-cell fluorescence imaging and optogenetic control of PKA kinase activity in fission yeast Schizosaccharomyces pombe."
Description

The cAMP-PKA signaling pathway plays a crucial role in sensing and responding to nutrient availability in the fission yeast Schizosaccharomyces pombe. This pathway monitors external glucose levels to control cell growth and sexual differentiation. However, the temporal dynamics of the cAMP-PKA pathway in response to external stimuli remains unclear mainly due to the lack of tools to quantitatively visualize the activity of the pathway. Here, we report the development of the kinase translocation reporter (KTR)-based biosensor spPKA-KTR1.0, which allows us to measure the dynamics of PKA activity in fission yeast cells. The spPKA-KTR1.0 is derived from the transcription factor Rst2, which translocates from the nucleus to the cytoplasm upon PKA activation. We found that spPKA-KTR1.0 translocates between the nucleus and cytoplasm in a cAMP-PKA pathway-dependent manner, indicating that the spPKA-KTR1.0 is a reliable indicator of the PKA activity in fission yeast cells. In addition, we implemented a system that simultaneously visualizes and manipulates the cAMP-PKA signaling dynamics by introducing bPAC, a photoactivatable adenylate cyclase, in combination with spPKA-KTR1.0. This system offers an opportunity for investigating the role of the signaling dynamics of the cAMP-PKA pathway in fission yeast cells with higher temporal resolution. All imaging raw data and quantifications are available in the dataset.

Submited Date
2024-02-16
Release Date
2024-04-08
Updated Date
-
License
Funding information
-
Data size
84.4 GB
Data formats
Tiff

Organism
Schizosaccharomyces pombe
Strain
See details in Sakai et al., bioRxiv, 2024
Cell Line
-
Genes
-
Proteins
-

Molecular Function (MF)
-
Biological Process (BP)
-
Cellular Component (CC)
-
Study Type
-
Imaging Methods
-

Method Summary

See details in Sakai et al., bioRxiv, 2024

Related paper(s)

Keiichiro Sakai, Kazuhiro Aoki, Yuhei Goto (2024) Live-cell fluorescence imaging and optogenetic control of PKA kinase activity in fission yeast Schizosaccharomyces pombe., Yeast (Chichester, England)

Published in April 7, 2024 (Electronic publication in April 7, 2024, midnight )

(Abstract) The cAMP-PKA signaling pathway plays a crucial role in sensing and responding to nutrient availability in the fission yeast Schizosaccharomyces pombe. This pathway monitors external glucose levels to control cell growth and sexual differentiation. However, the temporal dynamics of the cAMP-PKA pathway in response to external stimuli remains unclear mainly due to the lack of tools to quantitatively visualize the activity of the pathway. Here, we report the development of the kinase translocation reporter (KTR)-based biosensor spPKA-KTR1.0, which allows us to measure the dynamics of PKA activity in fission yeast cells. The spPKA-KTR1.0 is derived from the transcription factor Rst2, which translocates from the nucleus to the cytoplasm upon PKA activation. We found that spPKA-KTR1.0 translocates between the nucleus and cytoplasm in a cAMP-PKA pathway-dependent manner, indicating that the spPKA-KTR1.0 is a reliable indicator of the PKA activity in fission yeast cells. In addition, we implemented a system that simultaneously visualizes and manipulates the cAMP-PKA signaling dynamics by introducing bPAC, a photoactivatable adenylate cyclase, in combination with spPKA-KTR1.0. This system offers an opportunity for investigating the role of the signaling dynamics of the cAMP-PKA pathway in fission yeast cells with higher temporal resolution.

Contact(s)
Yuhei Goto
Organization(s)
National Institutes of Natural Sciences , National Institute for Basic Biology, Exploratory Research Center for Life and Living Systems , Division of Quantitative Biology
Image Data Contributors
Keiichiro Sakai
Quantitative Data Contributors
Keiichiro Sakai

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