Welcome to OMERO.figure

To get started...

About OMERO.figure

Version:

For more information, visit the OMERO.figure Home Page

© 2013-2025 University of Dundee & Open Microscopy Environment
OMERO is distributed under the terms of the GNU GPL and OMERO.figure under AGPL.
See: openmicroscopy.org

Edit ROIs

Draw & edit ROIs and load ROIs from OMERO

Save Changes to Figure?

Your changes will be lost if you don't save them

Paper Setup

Move Figure to Group

Resample Panels

Set a resolution range for selected panels. When exported as PDF, panel images outside this dpi range will be resampled as necessary.

dpi
dpi

Crop to Region

Click and drag on the image to choose a crop region or pick an ROI from the list below.

ROIs:

from Figure
from Clipboard
from OMERO Z-indexT-index

Edit Image ID

Choose a new Image ID for the selected panels

Color Picker

Lookup Table Chooser

Loading Lookup Tables...

 

Add Images

Add images to the figure by entering their IDs, separated by commas.
Hint: You can also select images in the webclient, click the link in right panel, copy the URL and paste it here:

Export as JSON

The current Figure is entirely defined by the JSON data below.

Import from JSON

Paste the JSON data for the Figure into the text box below.

Label Formatting

Markdown formatting

You can use "Markdown" syntax to add formatting to plain text. For example, **this text will be bold** and this *word* will be italic. NB: Links are not supported for panel labels.

This text will be formatted to... ...this text
BOLD Use 2 stars for **bold**. Use 2 stars for bold.
ITALIC Use 1 star for *italic*. Use 1 star for italic.
LINKS Add links with [Link text](http://link_url.com) Add links with Link text

Dynamic properties

The drop-down menu in the 'Add Labels' form allows you to create labels based on Image metadata. Labels created with square brackets indicate dynamic properties. The properties within the square brackets will be dynamically updated upon changes. Additional text can be added outside the square brackets and will not be affected when the labels are displayed.
The following table shows some examples, including the use of dynamic properties and markdown together.

This text will be formatted to... ...this text
X and Y in pixels X:[x.pixel] - Y:[y.pixel] X:52 - Y:89
X and Y in units X:[x.unit] - Y:[y.unit] X:0.43 µm - Y:0.23 µm
Width Width: [width.pixel] Width: 400
Height (with markdown formatting) *Height*: **[height.pixel]** Height: 300
Width with decimal precision of 3 Width: [width.unit; precision=3] Width: 4.450 µm
Time relative to the 3rd frame Time: [time.milliseconds; offset=3] Time: -58 ms
Time with decimal precision 2,
relative to the 3rd frame
Time: [time.seconds; precision=2; offset=3] Time: -0.06 s
Image ID Image ID: [image.id] Image ID: 23556
Dataset ID Dataset ID: [dataset.id] Dataset ID: 1654

Legend

The figure legend will be included in the PDF info page when the figure is exported.

Open

Created

Labels from Key-Value Pairs

Choose Key (shows numbers of images):


Example Label
OMERO
  • File
    • New
    • Ctrl+O Open...
    • Ctrl+S Save
    • Save a Copy...
    • Local storage...
    • Export as JSON...
    • Import from JSON...
    • Delete
    • Move Figure to Group...
    • Paper Setup...
    • Add Figure Legend...
  • Edit
    • Ctrl+Z Undo
    • Ctrl+Y Redo
    • Ctrl+C Copy
    • Ctrl+V Paste
  • Help
    • About OMERO.figure
    • Home Page
  • Align Width
  • Align Height
  • Width & Height
  • Align Magnification
  • PDF
  • PDF with images
  • TIFF (300 dpi)
  • TIFF with images
  • New OMERO Image

  • Info
  • Preview
  • Labels
Zoom

Scalebar

Add Labels
Edit Labels