{ "cells": [ { "cell_type": "code", "execution_count": 78, "id": "e4ff106e-c6b4-4da3-88d0-143641816deb", "metadata": {}, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "from matplotlib import pyplot as plt\n", "import seaborn as sns\n", "from scipy import stats\n", "from statsmodels.stats.multicomp import pairwise_tukeyhsd\n", "plt.rcParams['pdf.fonttype'] = 42" ] }, { "cell_type": "code", "execution_count": 66, "id": "9613bdaf-456e-46eb-af14-c40a2d7849a8", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | Intensity | \n", "Length | \n", "strain | \n", "genotype | \n", "
---|---|---|---|---|
0 | \n", "23.188 | \n", "11.437 | \n", "L972 | \n", "WT | \n", "
1 | \n", "12.775 | \n", "13.391 | \n", "L972 | \n", "WT | \n", "
2 | \n", "18.562 | \n", "12.226 | \n", "L972 | \n", "WT | \n", "
3 | \n", "17.600 | \n", "11.902 | \n", "L972 | \n", "WT | \n", "
4 | \n", "14.675 | \n", "12.087 | \n", "L972 | \n", "WT | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
329 | \n", "27.087 | \n", "13.433 | \n", "HS754 | \n", "Padh11 | \n", "
330 | \n", "36.650 | \n", "12.299 | \n", "HS754 | \n", "Padh11 | \n", "
331 | \n", "42.462 | \n", "12.892 | \n", "HS754 | \n", "Padh11 | \n", "
332 | \n", "37.038 | \n", "12.888 | \n", "HS754 | \n", "Padh11 | \n", "
333 | \n", "34.962 | \n", "14.796 | \n", "HS754 | \n", "Padh11 | \n", "
334 rows × 4 columns
\n", "group1 | group2 | meandiff | p-adj | lower | upper | reject | \n", "
---|---|---|---|---|---|---|
Padh1 | Padh11 | -0.5049 | 0.379 | -1.218 | 0.2082 | False | \n", "
Padh1 | Ptdh1 | 3.5888 | 0.0 | 2.8876 | 4.29 | True | \n", "
Padh1 | Ptdh11 | 2.4379 | 0.0 | 1.6874 | 3.1884 | True | \n", "
Padh1 | Ptdh13 | -0.2318 | 0.9963 | -1.2126 | 0.749 | False | \n", "
Padh1 | Ptdh15 | -0.0203 | 1.0 | -0.7303 | 0.6896 | False | \n", "
Padh1 | WT | -0.6863 | 0.3949 | -1.6671 | 0.2945 | False | \n", "
Padh1 | empty | -0.3518 | 0.9577 | -1.3326 | 0.629 | False | \n", "
Padh11 | Ptdh1 | 4.0937 | 0.0 | 3.3957 | 4.7916 | True | \n", "
Padh11 | Ptdh11 | 2.9428 | 0.0 | 2.1953 | 3.6902 | True | \n", "
Padh11 | Ptdh13 | 0.2731 | 0.9899 | -0.7054 | 1.2515 | False | \n", "
Padh11 | Ptdh15 | 0.4845 | 0.4226 | -0.2222 | 1.1913 | False | \n", "
Padh11 | WT | -0.1814 | 0.9992 | -1.1599 | 0.797 | False | \n", "
Padh11 | empty | 0.1531 | 0.9997 | -0.8254 | 1.1315 | False | \n", "
Ptdh1 | Ptdh11 | -1.1509 | 0.0001 | -1.887 | -0.4148 | True | \n", "
Ptdh1 | Ptdh13 | -3.8206 | 0.0 | -4.7905 | -2.8507 | True | \n", "
Ptdh1 | Ptdh15 | -3.6091 | 0.0 | -4.3039 | -2.9144 | True | \n", "
Ptdh1 | WT | -4.2751 | 0.0 | -5.245 | -3.3052 | True | \n", "
Ptdh1 | empty | -3.9406 | 0.0 | -4.9105 | -2.9707 | True | \n", "
Ptdh11 | Ptdh13 | -2.6697 | 0.0 | -3.6758 | -1.6636 | True | \n", "
Ptdh11 | Ptdh15 | -2.4582 | 0.0 | -3.2027 | -1.7137 | True | \n", "
Ptdh11 | WT | -3.1242 | 0.0 | -4.1303 | -2.1181 | True | \n", "
Ptdh11 | empty | -2.7897 | 0.0 | -3.7958 | -1.7836 | True | \n", "
Ptdh13 | Ptdh15 | 0.2115 | 0.9979 | -0.7647 | 1.1877 | False | \n", "
Ptdh13 | WT | -0.4545 | 0.9406 | -1.6423 | 0.7333 | False | \n", "
Ptdh13 | empty | -0.12 | 1.0 | -1.3078 | 1.0678 | False | \n", "
Ptdh15 | WT | -0.666 | 0.4293 | -1.6422 | 0.3102 | False | \n", "
Ptdh15 | empty | -0.3315 | 0.9686 | -1.3077 | 0.6447 | False | \n", "
WT | empty | 0.3345 | 0.9893 | -0.8533 | 1.5223 | False | \n", "