The file ‘AnalysisFigS2e.m’ is the program to make the figure files (‘ResultGrayMap_F1.png’, ‘ResultGrayMap_F2.png’ and ‘ResultGrayMap_F3.png’).  The corresponded data are contained in the '../../Fig3_A4/Fig3a/Simulations_3dim_VUW/R2d_A_data*seq*’ (* is the index).  The five shown conditions (R2, (5), (6), (7) and (8)) are contained in the folder ‘R2d_R2d_A_data18seq1’, ‘(5)_R2d_A_data3seq1’, ‘(6)_R2d_A_data23seq1’, ‘(7)_R2d_A_data16seq1’ and ‘(8)_R2d_A_data20seq1’, respectively.