The file ‘AnalysisFig2d.m’ is the program to make the figure file ‘Fig2d.eps’ and ‘Fig2d.png’.  The simulation data are contained in the folder named ‘Fig2e/data/Wtot_paraset1’.  Each folder named ’Wtot#_*‘ (# is the Wtot value, * is the index) contains simulation c++ program, mask images, and 3-dimensional deep-learning features time-series in the file named ‘Source.cpp‘, ‘video1.mp4’, and ‘r2_cond*.txt’ (* is the index), respectively. 