SSBD:database

Thumbnail for 296-Kawabata-MouseBrainShape

Summary of 296-Kawabata-MouseBrainShape

SSBD:database
296-Kawabata-MouseBrainShape
SSBD:database URL
https://ssbd.riken.jp/database/296-Kawabata-MouseBrainShape/
DOI
https://doi.org/10.24631/ssbd.db.2023.05.296
SSBD:repository
ssbd-repos-000296
SSBD:repository URL
https://ssbd.riken.jp/repository/296/
Title
Image processing and manual annotation data of mouse brains with neurogenic-tagged neurons from NeuroGT database
Description
Segmentation results of brain contours and tagged neurons for 168 imaging data sets provided from NeuroGT database and manual annotation data of anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images (131 images for the G2AN_TM11.5_L dataset and 10 images each for the other datasets) targeted mouse brains for evaluation
Release date
2023-05-09
Updated date
2023-05-29
Errata
2023/05/29 All BDML/BD5 data was updated cause of some format error in BD5
License
CC BY
Kind
Quantitative data based on Experiment
Number of Datasets
168 ( Image datasets: 0, Quantitative data datasets: 168 )
Size of Datasets
100.2 GB ( Image datasets: 0 bytes, Quantitative data datasets: 100.2 GB )
Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}, C57BL/6 neuroG2^{CreER}(G2A); Tau^{mGFP-nLacZ}, C57BL/6 Neurod4^{CreER}(D4A); Tau^{mGFP-nLacZ}, C57BL/6 Neurog1^{CreER}(G1C); Tau^{mGFP-nLacZ}
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane
Biological Imaging Method
chemically fixed tissue, horseradish peroxidase, bright-field microscopy, cryostat-sectioned tissue
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Yukako Tohsato , Ritsumeikan University , Faculty of Information Science and Engineering , Laboratory of compubational biology
Contributors
Hiroto Kawabata, Yuki Shimojo, Tatsumi Hirata, Yukako Tohsato

Dataset List of 296-Kawabata-MouseBrainShape

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM13.5_G
# 10547
Datast ID ImageProcessingResult_G1CN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 306.0 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM13.5_L
# 10548
Datast ID ImageProcessingResult_G1CN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 138.6 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM14.5_G
# 10549
Datast ID ImageProcessingResult_G1CN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 98.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM14.5_L
# 10550
Datast ID ImageProcessingResult_G1CN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 95.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM15.5_G
# 10551
Datast ID ImageProcessingResult_G1CN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 285.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM15.5_L
# 10552
Datast ID ImageProcessingResult_G1CN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 303.5 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM16.5_G
# 10553
Datast ID ImageProcessingResult_G1CN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 188.5 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM16.5_L
# 10554
Datast ID ImageProcessingResult_G1CN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 138.6 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM17.5_G
# 10555
Datast ID ImageProcessingResult_G1CN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 189.9 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_TM17.5_L
# 10556
Datast ID ImageProcessingResult_G1CN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 118.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_woTM_G
# 10557
Datast ID ImageProcessingResult_G1CN_woTM_G
Dataset Kind Quantitative data
Dataset Size 386.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G1CN_woTM_L
# 10558
Datast ID ImageProcessingResult_G1CN_woTM_L
Dataset Kind Quantitative data
Dataset Size 170.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM9.5_G
# 10559
Datast ID ImageProcessingResult_G2AN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 4.3 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM9.5_L
# 10560
Datast ID ImageProcessingResult_G2AN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 305.8 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM10.5_G
# 10561
Datast ID ImageProcessingResult_G2AN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 3.0 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM10.5_L
# 10562
Datast ID ImageProcessingResult_G2AN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 194.6 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM11.5_G
# 10563
Datast ID ImageProcessingResult_G2AN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 2.0 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM11.5_L
# 10564
Datast ID ImageProcessingResult_G2AN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 750.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM12.5_G
# 10565
Datast ID ImageProcessingResult_G2AN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 2.9 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM12.5_L
# 10566
Datast ID ImageProcessingResult_G2AN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 627.0 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM13.5_G
# 10567
Datast ID ImageProcessingResult_G2AN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 2.2 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM13.5_L
# 10568
Datast ID ImageProcessingResult_G2AN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 529.6 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM14.5_G
# 10569
Datast ID ImageProcessingResult_G2AN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 3.6 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM14.5_L
# 10570
Datast ID ImageProcessingResult_G2AN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 828.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM15.5_G
# 10571
Datast ID ImageProcessingResult_G2AN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 1.6 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM15.5_L
# 10572
Datast ID ImageProcessingResult_G2AN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 720.7 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM16.5_G
# 10573
Datast ID ImageProcessingResult_G2AN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 2.2 GB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM16.5_L
# 10574
Datast ID ImageProcessingResult_G2AN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 450.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM17.5_G
# 10575
Datast ID ImageProcessingResult_G2AN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 522.4 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM17.5_L
# 10576
Datast ID ImageProcessingResult_G2AN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 150.9 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM18.5_G
# 10577
Datast ID ImageProcessingResult_G2AN_TM18.5_G
Dataset Kind Quantitative data
Dataset Size 802.1 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_TM18.5_L
# 10578
Datast ID ImageProcessingResult_G2AN_TM18.5_L
Dataset Kind Quantitative data
Dataset Size 451.2 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_woTM_G
# 10579
Datast ID ImageProcessingResult_G2AN_woTM_G
Dataset Kind Quantitative data
Dataset Size 133.4 MB
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Thumbnail Thumbnail for dataset ImageProcessingResult_G2AN_woTM_L
# 10580
Datast ID ImageProcessingResult_G2AN_woTM_L
Dataset Kind Quantitative data
Dataset Size 271.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM9.5_G
# 10581
Datast ID ManualAnnotation_D1BN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 30.6 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM9.5_L
# 10582
Datast ID ManualAnnotation_D1BN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 28.4 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM10.5_G
# 10583
Datast ID ManualAnnotation_D1BN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 26.3 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM10.5_L
# 10584
Datast ID ManualAnnotation_D1BN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 27.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM11.5_G
# 10585
Datast ID ManualAnnotation_D1BN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 26.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM11.5_L
# 10586
Datast ID ManualAnnotation_D1BN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 23.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM12.5_G
# 10587
Datast ID ManualAnnotation_D1BN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 31.2 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM12.5_L
# 10588
Datast ID ManualAnnotation_D1BN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 41.1 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM13.5_G
# 10589
Datast ID ManualAnnotation_D1BN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 36.5 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM13.5_L
# 10590
Datast ID ManualAnnotation_D1BN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 23.0 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM14.5_G
# 10591
Datast ID ManualAnnotation_D1BN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 28.6 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM14.5_L
# 10592
Datast ID ManualAnnotation_D1BN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 32.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM15.5_G
# 10593
Datast ID ManualAnnotation_D1BN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 27.8 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM15.5_L
# 10594
Datast ID ManualAnnotation_D1BN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 18.7 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM16.5_G
# 10595
Datast ID ManualAnnotation_D1BN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 31.1 MB
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Thumbnail Thumbnail for dataset ManualAnnotation_D1BN_TM16.5_L
# 10596
Datast ID ManualAnnotation_D1BN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 29.6 MB
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